> ?A>@ bjbjFF &,,K~~~84 $ R#___:____Э`~ *_0 _#3#_#_ ,_:F~I~The following patterns are used in the rule-based phosphorylation information extraction system RLIMS-P (Rule-based LIterature Mining System for Protein Phosphorylation).
PHOSPHORYLATE PATTERNS
[NP_Agent] to [NP_Site] PHOS [NP_Theme]
[NP_Agent] [NP_Site] AUTO-PHOS
[NP_Agent] AV of [NP_Site] PHOS [NP_Theme]
[NP_Agent] PHOS [NP_Site] of [NP_Theme]
[NP_Agent] PHOS [NP_Theme] at [NP_Site]
[NP_Agent] PHOS [NP_Theme]
[NP_Agent] PHOS [NP] [PREP] [NP_Theme]
[NP_Agent] PHOS [PREP] [NP_Site]
[NP_Agent] PHOS [NP_Site]
[NP_Agent] AUTO-PHOS( [PREP] [NP_Site])?
[NP_Agent] PHOS [NP_Site] of [NP_Theme] at [NP_site]
[NP_Agent] PHOS [NP_Site] at [NP_Site]
[NP_PP] PHOS [NP_Theme]
PHOSPHORYLATED PATTERNS
ACTIVE RULES
[NP_Agent] but AV [NP_P] PATED [NP_Theme] at [NP_Site]
[NP_Agent] PATED [NP_Theme] (at [NP_Site])?
[NP_Theme] becomes [NP_Site]? PATED (by [NP_Agent])?
[NP_Agent] [NP_Site] PATED
[NP_Theme] VP in [its] PATED [NP]
[NP_Theme] PATED on [NP_Site]
[NP_Agent] PATED all of [NP_Theme] (at [NP_Site])?
[NP_Theme] when PATED (by [NP_Agent])?
[NP_Site] PATED [NP_Theme]
[NP_Agent] PATED [NP_Site]
PASSIVE RULES
[NP_Theme] PATED by [NP_Agent] at ([NP_Site])?
[NP_Theme] PATED by [NP_Site-Ag] at [NP_Site]
[NP_Theme] VP_A to NP of NP_P PATED by [NP_Agent] at ([NP_Site])?
[NP_Theme] PATED at [NP_Site] (by [NP_Agent])?
[NP_Theme] PATED at [NP_Source] by [NP_Agent]
[NP_Theme] PATED during [NP] by [NP_Agent]
[NP_Theme] PATED by [NP_Agent] and by? [NP_Agent] ( at [NP_Site])?
[NP_Theme] PATED at [NP_Site] and at? [NP_Site] by [NP_Agent]
[NP_Theme] PATED at [NP_Site_Th] at? [NP_Site]
[NP_Theme] VP with NP_B and PATED by [NP_Agent] (at [NP_Site])?
[NP_Agent/Theme] AUTO-PATED (at [NP-Site])?
[NP_Site] , VP [NP_PP] that? PATED by [NP_Agent]
([NP_Site] of )? NP_Theme PATED by [NP_Agent] in NP but also by [NP_Agent]
[NP_Site] PATED by [NP_Agent] in NP but also by [NP_Agent]
[NP_Site] PATED by [NP_Agent]
[NP_Site] of [NP_Theme] PATED by [NP_Agent]
[NP_Site] of [NP_Site-Theme] PATED (by [NP_Agent] )?
[NP_Theme] when PATED (by [NP_Agent])?
[NP_Theme] becomes [NP_Site]? PATED (by [NP_Agent])?
ADJECTIVAL RULES
PATED [NP_Site]
PATED [NP_Theme]
[Site phosphorylated NP-Theme NP]
[Site Phosphorylated forms NP] of Theme
[Agent phosphorylated targets NP] such as/like NP-site
PHOSPHORYLATION PATTERNS
[A induced ? phosphorytion NP] of NP-Theme
[Agent phosphorylation NP] of NP-Theme
[phosphorylation NP] of NP-Theme by NP-Agent
[phosphorylation] of NP-SITE in NP-Theme by NP-Agent
SITE [is/was/were VP] [phosphorylation sites NP] for NP-Agent
NP-Theme VP [phosphorylation site NP-PP] for NP-Agent
NP-Theme VP [phosphorylation NP] by NP-Agent at NP-SITE
NP-Agent VP for [phosphorylation NP] of NP-Theme
NP-Agent VP NP-Theme via/by phosphorylation
[phosphorylation NP] of NP-Agent by NP-Theme
[Theme phosphorylation] by NP-Agent
NP-Site VP (in|within) [phosphorylation sites NP-PP] for NP-AgentNP-Theme VP Site for [phosphorylation NP] by Agent
autophosphorylation of NP-Agent /NP-Theme
RLIMS-P Rule-Patterns Originate: January 24, 2005
HYPERLINK "http://pir.georgetown.edu/iprolink/" http://pir.georgetown.edu/iprolink/
ijtv
JKǻhE?h!z0JCJaJ#jhE?h!zCJUaJh"h!zCJaJh!zCJaJjh!zCJUaJh"h!zCJ
h!z0J
h!z5CJh"h!zmHsHh"h!zmHsHh!z h">*h""
9 : b c
6
7
l
m
K
;<qr+,GHcd$a$destu
F
G
u
v
$%TU@@A|}&'\]^opq3345no9:pq 67\
(FK/ =!"#$%DyK$http://pir.georgetown.edu/iprolink/yKHhttp://pir.georgetown.edu/iprolink/@@@NormalCJ_HmH nHsH tH8`8 Heading 1$@&5>`> Heading 2$$@&a$5DA@DDefault Paragraph FontVi@VTable Normal :V44
la(k@(No List4o4HTML Markup<B*4@4"Header
!4 @4"Footer
!6U@!6" Hyperlink>*B*ph&
9:bc
67lm;<qr+,GHcdestuFGuv$%TU@A|}&'\]^opq 3 4 5 n o 9
:
p
q
67\
(FK00x0000000000000000000000000000000 00 00 00 00 0 000 0 00 0000 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000\>0\>0\>0@0@0\~03
d@3
5hX*W>o8*urn:schemas-microsoft-com:office:smarttagsdate1200524DayMonthYear2At~ '/7;CKRX`dlt|
+28@HOU]cjnv~!)07=EPWems{~
'-4=EIQZav~ ,3:BHP\eksw
"&.:DKRV^{!6>BIU]rz~"(0;BPXxP ] v
!
G
V
~
>MhqtK":Zp"E0I`E[6 7 J N
K3333333333333333333333KK!z" @
`K
@@UnknownGz Times New Roman5Symbol3&z Arial"qhՌCđ&4v
v
!24EEH(?" PHOSPHORYLATE PATTERNSMuruguPreferred CustomerOh+'0x
4@
LX`hp PHOSPHORYLATE PATTERNS MuruguSuruNormal.dotRPreferred CustomerA52fMicrosoft Word 10.0@ա@
Z@w`v
՜.+,D՜.+,Lhp
AU-KBCE:
PHOSPHORYLATE PATTERNSTitle 8@_PID_HLINKSA4=$http://pir.georgetown.edu/iprolink/
!"#$%&'()*+,-/012345789:;<=@Root Entry F`BData
1Table#WordDocument&SummaryInformation(.DocumentSummaryInformation86CompObjj
FMicrosoft Word Document
MSWordDocWord.Document.89q